EGO --- A Program for Parallel Molecular Dynamics Simulation of Proteins (c) by Markus Eichinger, Helmut Heller and Helmut Grubmueller Version VIII Version EGO_VIII is released and is free for download from this site. In this distribution also sample data files are provided in the form of PDB, PSF and parameter files which help to make a quick and easy start with EGO. To run EGO, you first have to to produce the 'lis-files' (which is the EGO internal data format) by runnig xpl2lis, which is also included in the distribution. This is a ready-to-run version of the molecular dynamics simulation program EGO, configured to run a small demonstration simulation on a parallel computer under PARIX, PVM, or MPI. Also a sequential version is included in this release. For the installation see the manual. The program is made available strictly as is, no warranty of any sort is given, nor any promise of support. The program or any part of it may not be used for commercial purposes, nor included in any other program that is sold commercially, unless the explicit approval of the authors is given. The program may be used and freely distributed for academic purposes, provided the authors are credited in all publications describing work done with use of the program. Credit should be given to Markus Eichinger Helmut Grubmueller Max-Planck-Institut fuer biophysikalische Chemie Arbeitsgruppe fuer theoretische molekulare Biophysik Am Fassberg 11 D-37077 Goettingen, GERMANY Helmut Heller Leibniz Rechenzentrum Barer Str. 21 D-80333 Muenchen, GERMANY Paul Tavan Institute for Medical Optics, LMU, Muenchen and for earlier developments also to Klaus Schulten, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign. U.S.A. To do so, you can simply cite the following publication: Markus Eichinger, Helmut Heller, and Helmut Grubmueller, "EGO - An Efficient Molecular Dynamics Program and its Application to Protein Dynamics Simulations", Workshop on Molecular Dynamics on Parallel Computers, John von Neumann Institute for Computing (NIC), Research Centre Juuelich, Germany, 8-10 February 1999, World Scientific, Singapore 912805, Eds.: Ruediger Esser, Peter Grassberger, Johannes Grotendorst, and Marius Lewerenz, pp. 154-174 (2000). It is expected that changes or additions to the program are sent to the authors for eventual inclusion, to make the program more useful for everyone. ========================================================================== To actually run EGO, unpack the source using either: gunzip ego_viii.taz; tar -xvf ego_viii.tar or: gtar -xzvf ego_viii.taz sometimes gtar is called gnutar. More information can be found on our WWW page: http://www.lrz.de/~heller/ego/index.html If you have problems running EGO, please contact Helmut Heller at: heller@lrz.de.